Publications
Preprints
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Paquola C, Vos de Wael R, Wagstyl K, Bethlehem R, Seidlitz J, Hong S-J, Bullmore E, Evans A, Misic B, Margulies DS, Smallwood J, Bernhardt B (2018)Dissociations between microstructural and functional hierarchies within regions of transmodal cortexbioRxiv
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Bayrak Ş, Khalil AA, Villringer K, Fiebach JB, Villringer A, Margulies DS, Ovadia-Caro S (2018)The impact of ischemic stroke on connectivity gradientsbioRxiv
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Buckner RL, Margulies DS (2018)Macroscale Cortical Organization and a Default-Like Transmodal Apex Network in the Marmoset MonkeybioRxiv
Journal articles
2019
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Turnbull A, Wang H-T, Schooler JW, Jefferies E, Margulies DS, Smallwood J (2019)The ebb and flow of attention: Between-subject variation in intrinsic connectivity and cognition associated with the dynamics of ongoing experienceNeuroimage 185: 286–299
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Mendes N, Oligschlaeger S, Lauckner ME, Golchert J, Huntenburg JM, Falkiewicz M, Ellamil M, Krause S, Baczkowski BM, Cozatl R, Osoianu A, Kumral D, Pool J, Golz L, Dreyer M, Haueis P, Jost R, Kramarenko Y, Engen H, Ohrnberger K, Gorgolewski KJ, Farrugia N, Babayan A, Reiter A, Schaare HL, Reinelt J, Roebbig J, Uhlig M, Erbey M, Gaebler M, Smallwood J, Villringer A, Margulies DS (2019)A functional connectome phenotyping dataset including cognitive state and personality measuresScientific data 6: 180307
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Babayan A, Erbey M, Kumral D, Reinelt JD, Reiter AMF, Röbbig J, Schaare HL, Uhlig M, Anwander A, Bazin P-L, Horstmann A, Lampe L, Nikulin VV, Okon-Singer H, Preusser S, Pampel A, Rohr CS, Sacher J, Thöne-Otto A, Trapp S, Nierhaus T, Altmann D, Arelin K, Blöchl M, Bongartz E, Breig P, Cesnaite E, Chen S, Cozatl R, Czerwonatis S, Dambrauskaite G, Dreyer M, Enders J, Engelhardt M, Fischer MM, Forschack N, Golchert J, Golz L, Guran CA, Hedrich S, Hentschel N, Hoffmann DI, Huntenburg JM, Jost R, Kosatschek A, Kunzendorf S, Lammers H, Lauckner ME, Mahjoory K, Kanaan AS, Mendes N, Menger R, Morino E, Näthe K, Neubauer J, Noyan H, Oligschläger S, Panczyszyn-Trzewik P, Poehlchen D, Putzke N, Roski S, Schaller M-C, Schieferbein A, Schlaak B, Schmidt R, Gorgolewski KJ, Schmidt HM, Schrimpf A, Stasch S, Voss M, Wiedemann A, Margulies DS, Gaebler M, Villringer A (2019)A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adultsScientific Data 6: 180308
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Oligschläger S, Xu T, Baczkowski BM, Falkiewicz M, Falchier A, Linn G, Margulies DS (In press)Gradients of connectivity distance in the cerebral cortex of the macaque monkeyBrain Struct Funct
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Tang R, Ketcha M, Badea A, Calabrese ED, Margulies DS, Vogelstein JT, Priebe CE, Sussman DL (In press)Connectome Smoothing via Low-rank ApproximationsIEEE Transactions on Medical Imaging
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Murphy C, Wang H-T, Konu D, Lowndes R, Margulies DS, Jefferies E, Smallwood J (2019)Modes of operation: A topographic neural gradient supporting stimulus dependent and independent cognitionNeuroImage 186: 487–496
2018
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Vos de Wael R, Lariviere S, Caldairou B, Hong S-J, Margulies DS, Jefferies E, Bernasconi A, Smallwood J, Bernasconi N, Bernhardt BC (2018)Anatomical and microstructural determinants of hippocampal subfield functional connectome embeddingProc Natl Acad Sci U S A 115(40): 10154–10159
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Milham MP, Ai L, Koo B, Xu T, Amiez C, Balezeau F, Baxter MG, Blezer ELA, Brochier T, Chen A, Croxson PL, Damatac CG, Dehaene S, Everling S, Fair DA, Fleysher L, Freiwald W, Froudist-Walsh S, Griffiths TD, Guedj C, Hadj-Bouziane F, Ben Hamed S, Harel N, Hiba B, Jarraya B, Jung B, Kastner S, Klink PC, Kwok SC, Laland KN, Leopold DA, Lindenfors P, Mars RB, Menon RS, Messinger A, Meunier M, Mok K, Morrison JH, Nacef J, Nagy J, Rios MO, Petkov CI, Pinsk M, Poirier C, Procyk E, Rajimehr R, Reader SM, Roelfsema PR, Rudko DA, Rushworth MFS, Russ BE, Sallet J, Schmid MC, Schwiedrzik CM, Seidlitz J, Sein J, Shmuel A, Sullivan EL, Ungerleider L, Thiele A, Todorov OS, Tsao D, Wang Z, Wilson CRE, Yacoub E, Ye FQ, Zarco W, Zhou Y-di, Margulies DS, Schroeder CE (2018)An Open Resource for Non-human Primate ImagingNeuron (100)
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Sormaz M, Murphy C, Wang H-T, Hymers M, Karapanagiotidis T, Poerio G, Margulies DS, Jefferies E, Smallwood J (2018)Default mode network can support the level of detail in experience during active task statesProc Natl Acad Sci U S A 115(37): 9318–9323
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Medea B, Karapanagiotidis T, Konishi M, Ottaviani C, Margulies DS, Bernasconi A, Bernasconi N, Bernhardt BC, Jefferies E, Smallwood J (2018)How do we decide what to do? Resting-state connectivity patterns and components of self-generated thought linked to the development of more concrete personal goalsExp Brain Res 236(9): 2469–2481
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Wang H-T, Bzdok D, Margulies DS, Craddock C, Milham M, Jefferies E, Smallwood J (2018)Patterns of thought: Population variation in the associations between large-scale network organisation and self-reported experiences at restNeuroimage 176: 518–527
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Kipping JA, Margulies DS, Eickhoff SB, Lee A, Qiu A (2018)Trade-off of cerebello-cortical and cortico-cortical functional networks for planning in 6-year-old childrenNeuroimage 176: 510–517
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Kernbach JM, Satterthwaite TD, Bassett DS, Smallwood J, Margulies DS, Krall S, Shaw P, Varoquaux G, Thirion B, Konrad K, Bzdok D (2018)Shared endo-phenotypes of default mode dsfunction in attention deficit/hyperactivity disorder and autism spectrum disorderTransl Psychiatry 8(1): 133
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Murphy C, Jefferies E, Rueschemeyer S-A, Sormaz M, Wang H-T, Margulies DS, Smallwood J (2018)Distant from input: Evidence of regions within the default mode network supporting perceptually-decoupled and conceptually-guided cognitionNeuroimage 171: 393–401
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Hartwigsen G, Neef NE, Camilleri JA, Margulies DS, Eickhoff SB (2018)Functional Segregation of the Right Inferior Frontal Gyrus: Evidence From Coactivation-Based ParcellationCereb Cortex
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Jakobsen E, Liem F, Klados MA, Bayrak S, Petrides M, Margulies DS (2018)Automated individual-level parcellation of Broca’s region based on functional connectivityNeuroimage 170: 41–53
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Villena-Gonzalez M, Wang H-T, Sormaz M, Mollo G, Margulies DS, Jefferies EA, Smallwood J (2018)Individual variation in the propensity for prospective thought is associated with functional integration between visual and retrosplenial cortexCortex 99: 224–234
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Lefort-Besnard J, Bassett DS, Smallwood J, Margulies DS, Derntl B, Gruber O, Aleman A, Jardri R, Varoquaux G, Thirion B, Eickhoff SB, Bzdok D (2018)Different shades of default mode disturbance in schizophrenia: Subnodal covariance estimation in structure and functionHum Brain Mapp 39(2): 644–661
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Huntenburg JM, Bazin P-L, Margulies DS (2018)Large-Scale Gradients in Human Cortical OrganizationTrends Cogn Sci 22(1): 21–31
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Kernbach JM, Yeo BTT, Smallwood J, Margulies DS, Thiebaut de Schotten M, Walter H, Sabuncu MR, Holmes AJ, Gramfort A, Varoquaux G, Thirion B, Bzdok D (2018)Subspecialization within default mode nodes characterized in 10,000 UK Biobank participantsProceedings of the National Academy of Sciences U S A
2017
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Margulies DS, Smallwood J (2017)Converging evidence for the role of transmodal cortex in cognitionProc Natl Acad Sci U S A 114(48): 12641–12643
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Ho TC, Sacchet MD, Connolly CG, Margulies DS, Tymofiyeva O, Paulus MP, Simmons AN, Gotlib IH, Yang TT (2017)Inflexible Functional Connectivity of the Dorsal Anterior Cingulate Cortex in Adolescent Major Depressive DisorderNeuropsychopharmacology 42(12): 2434–2445
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Margulies DS (2017)Unraveling the Complex Tapestry of Association NetworksNeuron 95(2): 239–241
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Poerio GL, Sormaz M, Wang H-T, Margulies DS, Jefferies E, Smallwood J (2017)The role of the default mode network in component processes underlying the wandering mindSoc Cogn Affect Neurosci 12(7): 1047–1062
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Kuehn E, Dinse J, Jakobsen E, Long X, Schafer A, Bazin P-L, Villringer A, Sereno MI, Margulies DS (2017)Body Topography Parcellates Human Sensory and Motor CortexCereb Cortex 27(7): 3790–3805
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Oligschlager S, Huntenburg JM, Golchert J, Lauckner ME, Bonnen T, Margulies DS (2017)Gradients of connectivity distance are anchored in primary cortexBrain Struct Funct 222(5): 2173–2182
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de Caso I, Karapanagiotidis T, Aggius-Vella E, Konishi M, Margulies DS, Jefferies E, Smallwood J (2017)Knowing me, knowing you: Resting-state functional connectivity of ventromedial prefrontal cortex dissociates memory related to self from a familiar otherBrain Cogn 113: 65–75
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Goulas A, Stiers P, Hutchison RM, Everling S, Petrides M, Margulies DS (2017)Intrinsic functional architecture of the macaque dorsal and ventral lateral frontal cortexJ Neurophysiol 117(3): 1084–1099
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Liem F, Varoquaux G, Kynast J, Beyer F, Kharabian Masouleh S, Huntenburg JM, Lampe L, Rahim M, Abraham A, Craddock RC, Riedel-Heller S, Luck T, Loeffler M, Schroeter ML, Witte AV, Villringer A, Margulies DS (2017)Predicting brain-age from multimodal imaging data captures cognitive impairmentNeuroimage 148: 179–188
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Kharabian Masouleh S, Herzig S, Klose L, Roggenhofer E, Tenckhoff H, Kaiser T, Thone-Otto A, Wiese M, Berg T, Schroeter ML, Margulies DS, Villringer A (2017)Functional connectivity alterations in patients with chronic hepatitis C virus infection: A multimodal MRI studyJ Viral Hepat 24(3): 216–225
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Huntenburg JM, Bazin P-L, Goulas A, Tardif CL, Villringer A, Margulies DS (2017)A Systematic Relationship Between Functional Connectivity and Intracortical Myelin in the Human Cerebral CortexCereb Cortex 27(2): 981–997
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Golchert J, Smallwood J, Jefferies E, Liem F, Huntenburg JM, Falkiewicz M, Lauckner ME, Oligschlager S, Villringer A, Margulies DS (2017)In need of constraint: Understanding the role of the cingulate cortex in the impulsive mindNeuroimage 146: 804–813
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Golchert J, Smallwood J, Jefferies E, Seli P, Huntenburg JM, Liem F, Lauckner ME, Oligschlager S, Bernhardt BC, Villringer A, Margulies DS (2017)Individual variation in intentionality in the mind-wandering state is reflected in the integration of the default-mode, fronto-parietal, and limbic networksNeuroimage 146: 226–235
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Bellec P, Chu C, Chouinard-Decorte F, Benhajali Y, Margulies DS, Craddock RC (2017)The Neuro Bureau ADHD-200 Preprocessed repositoryNeuroimage 144(Pt B): 275–286
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Sarzynska J, Falkiewicz M, Riegel M, Babula J, Margulies DS, Necka E, Grabowska A, Szatkowska I (2017)More intelligent extraverts are more likely to deceivePLoS One 12(4): e0176591
2016
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Margulies DS, Ghosh SS, Goulas A, Falkiewicz M, Huntenburg JM, Langs G, Bezgin G, Eickhoff SB, Castellanos FX, Petrides M, Jefferies E, Smallwood J (2016)Situating the default-mode network along a principal gradient of macroscale cortical organizationProc Natl Acad Sci U S A 113(44): 12574–12579.
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Alderson-Day B, Diederen K, Fernyhough C, Ford JM, Horga G, Margulies DS, McCarthy-Jones S, Northoff G, Shine JM, Turner J, van de Ven V, van Lutterveld R, Waters F, Jardri R (2016)Auditory Hallucinations and the Brain’s Resting-State Networks: Findings and Methodological ObservationsSchizophr Bull 42(5): 1110–1123
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Tzouma A, Margulies DS, Triarhou LC (2016)Commentary on "The Cerebellar System and What it Signifies from a Biological Perspective: A Communication by Christofredo Jakob (1866-1956) Before the Society of Neurology and Psychiatry of Buenos Aires, December 1938"Cerebellum 15(4): 417–424
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Hove MJ, Stelzer J, Nierhaus T, Thiel SD, Gundlach C, Margulies DS, Van Dijk KRA, Turner R, Keller PE, Merker B (2016)Brain Network Reconfiguration and Perceptual Decoupling During an Absorptive State of ConsciousnessCereb Cortex 26(7): 3116–3124
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Rohr CS, Villringer A, Solms-Baruth C, van der Meer E, Margulies DS, Okon-Singer H (2016)The neural networks of subjectively evaluated emotional conflictsHum Brain Mapp 37(6): 2234–2246
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Meshi D, Mamerow L, Kirilina E, Morawetz C, Margulies DS, Heekeren HR (2016)Sharing self-related information is associated with intrinsic functional connectivity of cortical midline brain regionsSci Rep 6: 22491
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Xiao Y, Friederici AD, Margulies DS, Brauer J (2016)Longitudinal changes in resting-state fMRI from age 5 to age 6years covary with language developmentNeuroimage 128: 116–124
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Xiao Y, Friederici AD, Margulies DS, Brauer J (2016)Development of a selective left-hemispheric fronto-temporal network for processing syntactic complexity in language comprehensionNeuropsychologia 83: 274–282
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Jakobsen E, Bottger J, Bellec P, Geyer S, Rubsamen R, Petrides M, Margulies DS (2016)Subdivision of Broca’s region based on individual-level functional connectivityEur J Neurosci 43(4): 561–571
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Cohen N, Margulies DS, Ashkenazi S, Schaefer A, Taubert M, Henik A, Villringer A, Okon-Singer H (2016)Using executive control training to suppress amygdala reactivity to aversive informationNeuroimage 125: 1022–1031
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Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline J-B, Yarkoni T, Margulies DS, Poldrack RA (2016)NeuroVaultorg: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brainNeuroimage 124(Pt B): 1242–1244
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Ellamil M, Berson J, Margulies DS (2016)Influences on and Measures of Unintentional Group SynchronyFront Psychol 7: 1744
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Xiao Y, Brauer J, Lauckner M, Zhai H, Jia F, Margulies DS, Friederici AD (2016)Development of the Intrinsic Language Network in Preschool Children from Ages 3 to 5 YearsPLoS One 11(11): e0165802
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Ellamil M, Berson J, Wong J, Buckley L, Margulies DS (2016)One in the Dance: Musical Correlates of Group Synchrony in a Real-World Club EnvironmentPLoS One 11(10): e0164783
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Lohmann G, Stelzer J, Zuber V, Buschmann T, Margulies DS, Bartels A, Scheffler K (2016)Task-Related Edge Density (TED)-A New Method for Revealing Dynamic Network Formation in fMRI Data of the Human BrainPLoS One 11(6): e0158185
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Smallwood J, Karapanagiotidis T, Ruby F, Medea B, de Caso I, Konishi M, Wang H-T, Hallam G, Margulies DS, Jefferies E (2016)Representing Representation: Integration between the Temporal Lobe and the Posterior Cingulate Influences the Content and Form of Spontaneous ThoughtPLoS One 11(4): e0152272
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Barnhofer T, Huntenburg JM, Lifshitz M, Wild J, Antonova E, Margulies DS (2016)How Mindfulness Training May Help to Reduce Vulnerability for Recurrent Depression: A Neuroscientific PerspectiveClinical Psychological Science 4(2): 328–343
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Craddock RC, Margulies DS, Bellec P, Nichols BN, Alcauter S, Barrios FA, Burnod Y, Cannistraci CJ, Cohen-Adad J, De Leener B, Dery S, Downar J, Dunlop K, Franco AR, Seligman Froehlich C, Gerber AJ, Ghosh SS, Grabowski TJ, Hill S, Sólon Heinsfeld A, Hutchison RM, Kundu P, Laird AR, Liew S-L, Lurie DJ, McLaren DG, Meneguzzi F, Mennes M, Mesmoudi S, O’Connor D, Pasaye EH, Peltier S, Poline J-B, Prasad G, Fraga Pereira R, Quirion P-O, Rokem A, Saad ZS, Shi Y, Strother SC, Toro R, Uddin LQ, Van Horn JD, Van Meter JW, Welsh RC, Xu T (2016)Brainhack: a collaborative workshop for the open neuroscience communityGigaScience 5(1): s13742–016-0121-x
2015
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Joel D, Berman Z, Tavor I, Wexler N, Gaber O, Stein Y, Shefi N, Pool J, Urchs S, Margulies DS, Liem F, Hanggi J, Jancke L, Assaf Y (2015)Sex beyond the genitalia: The human brain mosaicProc Natl Acad Sci U S A 112(50): 15468–15473
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Rohr CS, Dreyer FR, Aderka IM, Margulies DS, Frisch S, Villringer A, Okon-Singer H (2015)Individual differences in common factors of emotional traits and executive functions predict functional connectivity of the amygdalaNeuroimage 120: 154–163
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Garcia-Garcia I, Jurado MA, Garolera M, Marques-Iturria I, Horstmann A, Segura B, Pueyo R, Sender-Palacios MJ, Vernet-Vernet M, Villringer A, Junque C, Margulies DS, Neumann J (2015)Functional network centrality in obesity: A resting-state and task fMRI studyPsychiatry Res 233(3): 331–338
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Goulas A, Schaefer A, Margulies DS (2015)The strength of weak connections in the macaque cortico-cortical networkBrain Struct Funct 220(5): 2939–2951
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Striem-Amit E, Ovadia-Caro S, Caramazza A, Margulies DS, Villringer A, Amedi A (2015)Functional connectivity of visual cortex in the blind follows retinotopic organization principlesBrain 138(Pt 6): 1679–1695
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Nierhaus T, Forschack N, Piper SK, Holtze S, Krause T, Taskin B, Long X, Stelzer J, Margulies DS, Steinbrink J, Villringer A (2015)Imperceptible somatosensory stimulation alters sensorimotor background rhythm and connectivityJ Neurosci 35(15): 5917–5925
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Gorgolewski KJ, Mendes N, Wilfling D, Wladimirow E, Gauthier CJ, Bonnen T, Ruby FJM, Trampel R, Bazin P-L, Cozatl R, Smallwood J, Margulies DS (2015)A high resolution 7-Tesla resting-state fMRI test-retest dataset with cognitive and physiological measuresSci Data 2: 140054.
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Gorgolewski KJ, Varoquaux G, Rivera G, Schwarz Y, Ghosh SS, Maumet C, Sochat VV, Nichols TE, Poldrack RA, Poline J-B, Yarkoni T, Margulies DS (2015)NeuroVaultorg: a web-based repository for collecting and sharing unthresholded statistical maps of the human brainFront Neuroinform 9: 8
2014
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Garcia-Garcia I, Horstmann A, Jurado MA, Garolera M, Chaudhry SJ, Margulies DS, Villringer A, Neumann J (2014)Reward processing in obesity, substance addiction and non-substance addictionObes Rev 15(11): 853–869
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Schaefer A, Burmann I, Regenthal R, Arelin K, Barth C, Pampel A, Villringer A, Margulies DS, Sacher J (2014)Serotonergic modulation of intrinsic functional connectivityCurr Biol 24(19): 2314–2318
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Ovadia-Caro S, Margulies DS, Villringer A (2014)The value of resting-state functional magnetic resonance imaging in strokeStroke 45(9): 2818–2824
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Witte AV, Kerti L, Margulies DS, Floel A (2014)Effects of resveratrol on memory performance, hippocampal functional connectivity, and glucose metabolism in healthy older adultsJ Neurosci 34(23): 7862–7870
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Yang Z, Craddock RC, Margulies DS, Yan C-G, Milham MP (2014)Common intrinsic connectivity states among posteromedial cortex subdivisions: Insights from analysis of temporal dynamicsNeuroimage 93 Pt 1: 124–137
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Long X, Goltz D, Margulies DS, Nierhaus T, Villringer A (2014)Functional connectivity-based parcellation of the human sensorimotor cortexEur J Neurosci 39(8): 1332–1342
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Rojas GM, Galvez M, Vega Potler N, Craddock RC, Margulies DS, Castellanos FX, Milham MP (2014)Stereoscopic three-dimensional visualization applied to multimodal brain images: clinical applications and a functional connectivity atlasFront Neurosci 8: 328
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Callard F, Margulies DS (2014)What we talk about when we talk about the default mode networkFront Hum Neurosci 8: 619
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Schaefer A, Margulies DS, Lohmann G, Gorgolewski KJ, Smallwood J, Kiebel SJ, Villringer A (2014)Dynamic network participation of functional connectivity hubs assessed by resting-state fMRIFront Hum Neurosci 8: 195
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Gorgolewski KJ, Lurie D, Urchs S, Kipping JA, Craddock RC, Milham MP, Margulies DS, Smallwood J (2014)A correspondence between individual differences in the brain’s intrinsic functional architecture and the content and form of self-generated thoughtsPLoS One 9(5): e97176
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Stelzer J, Buschmann T, Lohmann G, Margulies DS, Trampel R, Turner R (2014)Prioritizing spatial accuracy in high-resolution fMRI data using multivariate feature weight mappingFront Neurosci 8: 66
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Bottger J, Schurade R, Jakobsen E, Schaefer A, Margulies DS (2014)Connexel visualization: a software implementation of glyphs and edge-bundling for dense connectivity data using brainGLFront Neurosci 8: 15
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Zuo X-N, Anderson JS, Bellec P, Birn RM, Biswal BB, Blautzik J, Breitner JCS, Buckner RL, Calhoun VD, Castellanos FX, Chen A, Chen B, Chen J, Chen X, Colcombe SJ, Courtney W, Craddock RC, Di Martino A, Dong H-M, Fu X, Gong Q, Gorgolewski KJ, Han Y, He Y, He Y, Ho E, Holmes A, Hou X-H, Huckins J, Jiang T, Jiang Y, Kelley W, Kelly C, King M, LaConte SM, Lainhart JE, Lei X, Li H-J, Li K, Li K, Lin Q, Liu D, Liu J, Liu X, Liu Y, Lu G, Lu J, Luna B, Luo J, Lurie D, Mao Y, Margulies DS, Mayer AR, Meindl T, Meyerand ME, Nan W, Nielsen JA, O’Connor D, Paulsen D, Prabhakaran V, Qi Z, Qiu J, Shao C, Shehzad Z, Tang W, Villringer A, Wang H, Wang K, Wei D, Wei G-X, Weng X-C, Wu X, Xu T, Yang N, Yang Z, Zang Y-F, Zhang L, Zhang Q, Zhang Z, Zhang Z, Zhao K, Zhen Z, Zhou Y, Zhu X-T, Milham MP (2014)An open science resource for establishing reliability and reproducibility in functional connectomicsSci Data 1: 140049.
2013
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Kipping JA, Grodd W, Kumar V, Taubert M, Villringer A, Margulies DS (2013)Overlapping and parallel cerebello-cerebral networks contributing to sensorimotor control: an intrinsic functional connectivity studyNeuroimage 83: 837–848
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Margulies DS, Petrides M (2013)Distinct parietal and temporal connectivity profiles of ventrolateral frontal areas involved in language productionJ Neurosci 33(42): 16846–16852
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Baird B, Smallwood J, Gorgolewski KJ, Margulies DS (2013)Medial and lateral networks in anterior prefrontal cortex support metacognitive ability for memory and perceptionJ Neurosci 33(42): 16657–16665
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Margulies DS, Bottger J, Watanabe A, Gorgolewski KJ (2013)Visualizing the human connectomeNeuroimage 80: 445–461
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Ovadia-Caro S, Villringer K, Fiebach J, Jungehulsing GJ, van der Meer E, Margulies DS, Villringer A (2013)Longitudinal effects of lesions on functional networks after strokeJ Cereb Blood Flow Metab 33(8): 1279–1285
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Lv Y, Margulies DS, Cameron Craddock R, Long X, Winter B, Gierhake D, Endres M, Villringer K, Fiebach J, Villringer A (2013)Identifying the perfusion deficit in acute stroke with resting-state functional magnetic resonance imagingAnn Neurol 73(1): 136–140
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Callard F, Smallwood J, Golchert J, Margulies DS (2013)The era of the wandering mind? Twenty-first century research on self-generated mental activityFront Psychol 4: 891
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Koehler S, Ovadia-Caro S, van der Meer E, Villringer A, Heinz A, Romanczuk-Seiferth N, Margulies DS (2013)Increased functional connectivity between prefrontal cortex and reward system in pathological gamblingPLoS One 8(12): e84565
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Smallwood J, Gorgolewski KJ, Golchert J, Ruby FJM, Engen H, Baird B, Vinski MT, Schooler JW, Margulies DS (2013)The default modes of reading: modulation of posterior cingulate and medial prefrontal cortex connectivity associated with comprehension and task focus while readingFront Hum Neurosci 7: 734
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Rohr CS, Okon-Singer H, Craddock RC, Villringer A, Margulies DS (2013)Affect and the brain’s functional organization: a resting-state connectivity approachPLoS One 8(7): e68015
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Lv Y, Margulies DS, Villringer A, Zang Y-F (2013)Effects of finger tapping frequency on regional homogeneity of sensorimotor cortexPLoS One 8(5): e64115
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Gorgolewski KJ, Margulies DS, Milham MP (2013)Making data sharing count: a publication-based solutionFront Neurosci 7: 9
2012
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Sehm B, Schafer A, Kipping J, Margulies DS, Conde V, Taubert M, Villringer A, Ragert P (2012)Dynamic modulation of intrinsic functional connectivity by transcranial direct current stimulationJ Neurophysiol 108(12): 3253–3263
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Callard F, Smallwood J, Margulies DS (2012)Default Positions: How Neuroscience’s Historical Legacy has Hampered Investigation of the Resting MindFront Psychol 3: 321
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Lohmann G, Ovadia-Caro S, Jungehulsing GJ, Margulies DS, Villringer A, Turner R (2012)Connectivity concordance mapping: a new tool for model-free analysis of FMRI data of the human brainFront Syst Neurosci 6: 13
2011
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Callard F, Margulies DS (2011)The Subject at Rest: Novel conceptualizations of self and brain from cognitive neuroscience’s study of the ‘resting state’Subjectivity 4(3): 227–257
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Taubert M, Lohmann G, Margulies DS, Villringer A, Ragert P (2011)Long-term effects of motor training on resting-state networks and underlying brain structureNeuroimage 57(4): 1492–1498
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Bottger J, Margulies DS, Horn P, Thomale UW, Podlipsky I, Shapira-Lichter I, Chaudhry SJ, Szkudlarek C, Mueller K, Lohmann G, Hendler T, Bohner G, Fiebach JB, Villringer A, Vajkoczy P, Abbushi A (2011)A software tool for interactive exploration of intrinsic functional connectivity opens new perspectives for brain surgeryActa Neurochir (Wien) 153(8): 1561–1572
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Gee DG, Biswal BB, Kelly C, Stark DE, Margulies DS, Shehzad Z, Uddin LQ, Klein DF, Banich MT, Castellanos FX, Milham MP (2011)Low frequency fluctuations reveal integrated and segregated processing among the cerebral hemispheresNeuroimage 54(1): 517–527
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Adelstein JS, Shehzad Z, Mennes M, Deyoung CG, Zuo X-N, Kelly C, Margulies DS, Bloomfield A, Gray JR, Castellanos FX, Milham MP (2011)Personality is reflected in the brain’s intrinsic functional architecturePLoS One 6(11): e27633
2010
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Margulies DS, Bottger J, Long X, Lv Y, Kelly C, Schafer A, Goldhahn D, Abbushi A, Milham MP, Lohmann G, Villringer A (2010)Resting developments: a review of fMRI post-processing methodologies for spontaneous brain activityMAGMA 23(5-6): 289–307
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Zuo X-N, Kelly C, Di Martino A, Mennes M, Margulies DS, Bangaru S, Grzadzinski R, Evans AC, Zang Y-F, Castellanos FX, Milham MP (2010)Growing together and growing apart: regional and sex differences in the lifespan developmental trajectories of functional homotopyJ Neurosci 30(45): 15034–15043
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Kelly C, Uddin LQ, Shehzad Z, Margulies DS, Castellanos FX, Milham MP, Petrides M (2010)Broca’s region: linking human brain functional connectivity data and non-human primate tracing anatomy studiesEur J Neurosci 32(3): 383–398
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Sajonz B, Kahnt T, Margulies DS, Park SQ, Wittmann A, Stoy M, Strohle A, Heinz A, Northoff G, Bermpohl F (2010)Delineating self-referential processing from episodic memory retrieval: common and dissociable networksNeuroimage 50(4): 1606–1617
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Lohmann G, Margulies DS, Horstmann A, Pleger B, Lepsien J, Goldhahn D, Schloegl H, Stumvoll M, Villringer A, Turner R (2010)Eigenvector centrality mapping for analyzing connectivity patterns in fMRI data of the human brainPLoS One 5(4): e10232
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Biswal BB, Mennes M, Zuo X-N, Gohel S, Kelly C, Smith SM, Beckmann CF, Adelstein JS, Buckner RL, Colcombe S, Dogonowski A-M, Ernst M, Fair D, Hampson M, Hoptman MJ, Hyde JS, Kiviniemi VJ, Kotter R, Li S-J, Lin C-P, Lowe MJ, Mackay C, Madden DJ, Madsen KH, Margulies DS, Mayberg HS, McMahon K, Monk CS, Mostofsky SH, Nagel BJ, Pekar JJ, Peltier SJ, Petersen SE, Riedl V, Rombouts SARB, Rypma B, Schlaggar BL, Schmidt S, Seidler RD, Siegle GJ, Sorg C, Teng G-J, Veijola J, Villringer A, Walter M, Wang L, Weng X-C, Whitfield-Gabrieli S, Williamson P, Windischberger C, Zang Y-F, Zhang H-Y, Castellanos FX, Milham MP (2010)Toward discovery science of human brain functionProc Natl Acad Sci U S A 107(10): 4734–4739
2009
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Margulies DS, Vincent JL, Kelly C, Lohmann G, Uddin LQ, Biswal BB, Villringer A, Castellanos FX, Milham MP, Petrides M (2009)Precuneus shares intrinsic functional architecture in humans and monkeysProc Natl Acad Sci U S A 106(47): 20069–20074
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Shehzad Z, Kelly AMC, Reiss PT, Gee DG, Gotimer K, Uddin LQ, Lee SH, Margulies DS, Roy AK, Biswal BB, Petkova E, Castellanos FX, Milham MP (2009)The resting brain: unconstrained yet reliableCereb Cortex 19(10): 2209–2229
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Roy AK, Shehzad Z, Margulies DS, Kelly AMC, Uddin LQ, Gotimer K, Biswal BB, Castellanos FX, Milham MP (2009)Functional connectivity of the human amygdala using resting state fMRINeuroimage 45(2): 614–626
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Kelly AMC, Di Martino A, Uddin LQ, Shehzad Z, Gee DG, Reiss PT, Margulies DS, Castellanos FX, Milham MP (2009)Development of anterior cingulate functional connectivity from late childhood to early adulthoodCereb Cortex 19(3): 640–657
2008
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Stark DE, Margulies DS, Shehzad ZE, Reiss P, Kelly AMC, Uddin LQ, Gee DG, Roy AK, Banich MT, Castellanos FX, Milham MP (2008)Regional variation in interhemispheric coordination of intrinsic hemodynamic fluctuationsJ Neurosci 28(51): 13754–13764
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Di Martino A, Scheres A, Margulies DS, Kelly AMC, Uddin LQ, Shehzad Z, Biswal B, Walters JR, Castellanos FX, Milham MP (2008)Functional connectivity of human striatum: a resting state FMRI studyCereb Cortex 18(12): 2735–2747
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Uddin LQ, Mooshagian E, Zaidel E, Scheres A, Margulies DS, Kelly AMC, Shehzad Z, Adelstein JS, Castellanos FX, Biswal BB, Milham MP (2008)Residual functional connectivity in the split-brain revealed with resting-state functional MRINeuroreport 19(7): 703–709
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Uddin LQ, Kelly AMC, Biswal BB, Margulies DS, Shehzad Z, Shaw D, Ghaffari M, Rotrosen J, Adler LA, Castellanos FX, Milham MP (2008)Network homogeneity reveals decreased integrity of default-mode network in ADHDJ Neurosci Methods 169(1): 249–254
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Castellanos FX, Margulies DS, Kelly C, Uddin LQ, Ghaffari M, Kirsch A, Shaw D, Shehzad Z, Di Martino A, Biswal B, Sonuga-Barke EJS, Rotrosen J, Adler LA, Milham MP (2008)Cingulate-precuneus interactions: a new locus of dysfunction in adult attention-deficit/hyperactivity disorderBiol Psychiatry 63(3): 332–337
2007
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Michanie C, Kunst G, Margulies DS, Yakhkind A (2007)Symptom prevalence of ADHD and ODD in a pediatric population in ArgentinaJ Atten Disord 11(3): 363–367
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Kelly AMC, Margulies DS, Castellanos FX (2007)Recent advances in structural and functional brain imaging studies of attention-deficit/hyperactivity disorderCurr Psychiatry Rep 9(5): 401–407
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Margulies DS, Kelly AMC, Uddin LQ, Biswal BB, Castellanos FX, Milham MP (2007)Mapping the functional connectivity of anterior cingulate cortexNeuroimage 37(2): 579–588
2006
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Lamprecht R, Margulies DS, Farb CR, Hou M, Johnson LR, LeDoux JE (2006)Myosin light chain kinase regulates synaptic plasticity and fear learning in the lateral amygdalaNeuroscience 139(3): 821–829
Conference Proceedings
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Margulies DS, Falkiewicz M, Huntenburg JM (2016)A cortical surface-based geodesic distance package for PythonGigaScience 5(suppl_1): s13742–016-0147–0-q
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Bottger J, Schafer A, Lohmann G, Villringer A, Margulies DS (2014)Three-dimensional mean-shift edge bundling for the visualization of functional connectivity in the brainIEEE Trans Vis Comput Graph 20(3): 471–480
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Gorgolewski KJ, Bazin P, Engen H, Margulies DS (2013)Fifty Shades of Gray, Matter: Using Bayesian Priors to Improve the Power of Whole-Brain Voxel- and Connexelwise Inferences2013 International Workshop on Pattern Recognition in Neuroimaging : 194–197
Book chapters
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Burns R, Haueis P, Margulies DS (2019)From regions to networks: Neuroimaging approaches to mapping brain organizationIn: Casting Light on the Dark Side of Brain Imaging, Academic Press: 135–138
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Margulies DS (2011)The Salmon of DoubtIn: Critical Neuroscience, Wiley-Blackwell: 273–285